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Note to Authors: standard acknowledgement statement
“This research was made possible by a grant from The Gulf of Mexico Research Initiative. Data are publicly available through the Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC) at https://data.gulfresearchinitiative.org (doi: [, , , …].”
or
“This research was made possible in part by a grant from The Gulf of Mexico Research Initiative, and in part by [list other sources]. Data are publicly available through the Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC) at https://data.gulfresearchinitiative.org (doi: [, , , …].”

Please note: In cases where data are stored on servers other than GRIIDC, append the appropriate depository name(s), URL(s) and DOI(s).
If no data were used, the data acknowledgement may be omitted.

Published/Accepted

    A

  1. Ainsworth, C.H., E.P. Chassignet, D. French-McCay, C.J. Beegle-Krause, I. Berenshtein, J. Englehardt, T. Fiddaman, H. Huang, M. Huettel, D. Justic, V.H. Kourafalou, Y. Liu, C. Mauritzen, S. Murawskia, S. Morey, T. Özgökmen, C.B. Paris, J. Ruzicka, S. Saul, J. Shepherd, S. Socolofsky, H. Solo Gabriele, T. Sutton, R.H. Weisberg, C. Wilson (2021). Ten years of modeling the Deepwater Horizon oil spill. Environmental Modelling & Software, 142, 105070.
  2. Aizinger, V., J. Proft, C. Dawson, D. Pothina, and S. Negusse (2013). A three-dimensional discontinuous Galerkin model applied to the baroclinic simulation of Corpus Christi Bay. Ocean Dynamics, 63, 89-113.
  3. Androulidakis, I., V. Kourafalou, T. M. Özgökmen, O. Garcia-Pineda, B. Lund, M. Le Henaff, C. Hu, B. K. Haus, G. Novelli, C. Guigand, H. Kang, L. Hole, and J. Horstmann (2018). Influence of river induced fronts on hydrocarbon transport: a multi-platform observational study. JGR-Oceans, 123(5), 3259-3285.

    4. B

  4. Bachman, S.D., B. Fox-Kemper, J.R. Taylor, L.N. Thomas (2017). Parameterization of Frontal Symmetric Instabilities. I: Theory for Resolved Fronts. Ocean Modelling, 109, 72-95.
  5. Barkan, R., J.C. McWilliams, A.F. Shchepetkin, J. Molemaker, L. Renault, A. Bracco, J. Choi (2017). Submesoscale dynamics in the northern Gulf of Mexico. Part I: Regional and seasonal characterization, and the role of river outflow. J. Phys. Oceanogr., 47(9), 2325-2346.
  6. Barkan, R., J.C. McWilliams, J. Molemaker, J. Choi, K. Srinivasan, A.F. Shchepetkin, A. Bracco (2017). Submesoscale dynamics in the northern Gulf of Mexico. Part II: Temperature-Salinity Relations and Cross Shelf Transport processes. J. Phys. Oceanogr., 47(9), 2347-2360.
  7. Barkan, R., J. Molemaker, K. Srinivasan, J.C. McWilliams, E.A. D’Asaro (2019). The Role of Horizontal Divergence in Submesoscale Frontogenesis. J. Phys. Oceanogr., 49(6), 1593-1618.
  8. Barker, Christopher, plus 21 others (2020). Progress in Operational Modeling in Support of Oil Spill Response. Journal of Marine Science and Engineering, 8(9), 668.
  9. Barzegar, M., D. Bogucki, B. K. Haus, T. Özgökmen, M. Shao (2021). Asymmetric Frontal Response across the Gulf of Mexico Front in Winter 2016. Journal of Marine Science and Engineering, 9(4), 402.
  10. Benbow, A. C., J. H. MacMahan, E. B. Thornton (2017). Analysis of Surface Foam Holes Associated with Depth-Limited Breaking. Journal of Coastal Research, 33(6), 1271-1282.
  11. Beron-Vera, F.J. (2014). Flow coherence: Distinguishing cause from effect. In G. Ruiz Chavarria (ed.), Topics in Fluid Mechanics, Springer, 81-89.
  12. Beron-Vera, F.J., M.J. Olascoaga, G. Haller, M. Farazmand, J. Trinanes and Y. Wang (2015). Dissipative inertial transport patterns near coherent Lagrangian eddies in the ocean. Chaos, 25(8), 087412.
  13. Beron-Vera, F.J., J. H. LaCasce (2016). Statistics of simulated and observed pair separation in the Gulf of Mexico. J. Phys. Oceanogr., 46(7), 2183-2199.
  14. Beron-Vera, F.J., M.J. Olascoaga and R. Lupkin (2016). Inertia-induced accumulation of flotsam in the subtropical gyres. Geophys. Res. Letters, 43(23), 12228-12233.
  15. Beron-Vera, F. J., M. J. Olascoaga, Y. Wang, J. Triñanes, P. Pérez-Brunius (2018). Enduring Lagrangian coherence of a Loop Current ring assessed using independent observations. Nature.com/Scientific Report, 8(1), 11275.
  16. Beron-Vera, Francisco J., Alireza Hadjighasem, Qiong Xia, Maria J Josefina Olascoaga, George Haller (2019). Coherent Lagrangian swirls among submesoscale motions. Proceedings of the National Academy of Sciences, 116(37), 18251-18256.
  17. Berta, M., A. Griffa, M. Magaldi, T. Özgökmen, A. Poje, A. Haza, J. Olascoaga (2015). Improved surface velocity and trajectory estimates in the Gulf of Mexico from blended satellite altimetry and drifter data. J. Atmos. Ocean. Technol., 32(10), 1880-1901.
  18. Berta, M., A. Griffa, T. M. Özgökmen and A.C. Poje (2016). Submesoscale evolution of surface drifter triads in the Gulf of Mexico. Geophysical Research Letters, 43(22), 12228-12233.
  19. Berta, M., A. Griffa, A. C. Haza, J. Horstmann, H. S. Huntley, R. Ibrahim, B. Lund, T. M. Özgökmen, A. C. Poje (2020). Submesoscale kinematic properties in summer and winter surface flows in the Northern Gulf of Mexico. JGR-Oceans, 25(10), e2020JC016085.
  20. Bodner, A. S., B. Fox-Kemper, L. P. Van Roekel, J.C. McWilliams, and P. P. Sullivan (2020). A perturbation approach to understanding the effects of turbulence on frontogenesis. Journal of Fluid Mechanics, 883, A25.
  21. Bodner, A.S., B. Fox‐Kemper (2020). A Breakdown in Potential Vorticity Estimation Delineates the Submesoscale‐to‐Turbulence Boundary in Large Eddy Simulations. JAMES, 12(10), e2020MS002049.
  22. Bogucki, D. J., H. Luo, and J.A. Domaradzki (2012). Experimental evidence of the Kraichnan scalar spectrum at high Reynolds number. J. Phys. Oceanogr., 42 (10), 1717-1728.
  23. Bogucki, D.J., and G. Spiers (2013). What percentage of the oceanic mixed layer is accessible to marine lidar? Global and the Gulf of Mexico prospective. Optics Express, 20(21), 23997-24014.
  24. Bogucki, D.J., K. Huguenard, B.K. Haus, T.M. Özgökmen, A. Reniers, N. J. M. Laxague (2015). Scaling Laws for the Upper-Ocean Temperature Dissipation Rate. Geophysical Research Letters, 42(3), 839-846.
  25. Bogucki, D. J., and J. A. Domaradzki (2015). Temperature gradient spectra and temperature dissipation rate in a turbulent convective flow. Journal of Turbulence, 16(12), 1179-1198.
  26. Bogucki, D., J. A. Domaradzki, and P. Von Allmen (2018). Polarimetric lidar measurements of aquatic turbulence – laboratory experiment. Optics Express, 26(6), 6806-6816.
  27. Bogucki, D. J., B. K. Haus, M. Barzegar, S. Mingming, J. A. Domaradzki (2020). On the nature of the turbulent energy dissipation energy beneath non‐breaking waves. Geophysical Research Letters, 47(19), e2020GL090138.
  28. Boufadel, M. C., F. Gao, L. Zhao, T. Özgökmen, R. Miller, T. King, B. Robinson, K. Lee, and I. Leifer (2018). Was the DeepWater Horizon Well Discharge Churn Flow? Implications on the estimation of the oil discharge and droplet size distribution. Geophysical Research Letters, 45(5), 2396-2403.
  29. Boufadel, M., R. Liu, L. Zhao, Y. Lu, T. Özgökmen, T. Nedwed, and K. Lee (2020). Transport of oil droplets in the upper ocean: impact of the eddy diffusivity. JGR-Oceans, 125(2), e2019JC015727.
  30. Boufadel, M., A. Bracco, E.P. Chassignet, S.S. Chen, E. D’Asaro, W.K. Dewar, O. Garcia-Pineda, D. Justić, J. Katz, V.H. Kourafalou, I.R. MacDonald, T.M. Özgökmen, C.B. Paris-Limouzy, S.S. Socolofsky, D. Halpern, J.G. Shepherd (2021). Physical Transport Processes that Affect the Distribution of Oil in the Gulf of Mexico: Observations and Modeling. Oceanography, 34(1), 58-75, Special Issue on the Gulf of Mexico Research Initiative: Ten Years of Oil Spill and Ecosystem Science.
  31. Bracco, A., G. Liu, D. Sun (2019). Mesoscale-submesoscale interactions in the Gulf of Mexico: From oil dispersion to climate. Chaos, Solitons & Fractals, 119, 63-72.
  32. Brouwer, R. L., M. A. de Schipper, P. F. Rynne, F. J. Graham, A. J.H.M. Reniers, J. H. MacMahan (2015). Surf zone monitoring using rotary wing Unmanned Aerial Vehicles. J. Atmos. Ocean. Technol., 32(4), 855–863.

    33. C

  33. Carlson, Daniel F., Tamay Özgökmen, Guillaume Novelli, Cedric Guigand, Henry Chang, Baylor Fox-Kemper, Jean Mensa, Sanchit Mehta, Erick Fredj, Helga Huntley, A.D. Kirwan, Maristella Berta, Mike Rebozo, Milan Curcic, Ed Ryan, Björn Lund, Brian Haus, Cameron Hunt, Shuyi Chen, Laura Bracken, Jochen Horstmann (2018). Surface Ocean Dispersion Observations from the Ship-Tethered Aerostat Remote Sensing System. Frontiers in Marine Science, 5, 479.
  34. Carrier, M., H. Ngodock, S. Smith, P. Muscarella, G. Jacobs, T. Özgökmen, B. Haus, and B. Lipphardt (2014). Impact of Assimilating Ocean Velocity Observations Inferred from Lagrangian Drifter Data Using the NCOM-4DVAR. Monthly Weather Review, 142(4), 1509–1524.
  35. Carrier, M., H. Ngodock, P. Muscarella, S. Smith (2016). Impact of Assimilating Surface Velocity Observations on the Model Sea Surface Height using the NCOM-4DVAR. Monthly Weather Review, 144, 1051-1068.
  36. Chang, H., H.S. Huntley, A.D. Kirwan, Jr., B.L. Lipphardt, Jr., M.H.M. Sulman (2018). Transport structures in a 3D periodic flow. Commun. Nonlinear Sci. Numer. Simul., 61, 84-103.
  37. Chang H., H. S. Huntley, A. D. Kirwan Jr., D. F. Carlson, J. A. Mensa, S. Mehta, G. Novelli, T. M. Özgökmen, B. Fox-Kemper, B. Pearson, J. Pearson, R. R. Harcourt, A. C. Poje (2019). Small-scale dispersion in the presence of Langmuir circulation. Journal of Physical Oceanography, 49(12), 3069-3085.
  38. Chanton, J., T. Zhao, B. E. Rosenheim, S. Joye, S. Bosman, C. Brunner, K. M. Yeager, A. R. Diercks, D. Hollander (2015). Using Natural Abundance Radiocarbon To Trace the Flux of Petrocarbon to the Seafloor Following the Deepwater Horizon Oil Spill. Environmental Science and Technology, 49(2), 847–854.
  39. Chen, S. S., and M. Curcic (2016). Ocean surface waves in Hurricane Ike (2008) and Superstorm Sandy (2012): Coupled modeling and observations. Ocean Modelling, 103, 161-176.
  40. Choi, J., A. Bracco, R. Barkan, A. F. Shchepetkin, J.C. McWilliams, J. Molemaker (2017). Submesoscale dynamics in the northern Gulf of Mexico. Part III: Lagrangian implications. J. Phys. Oceanogr., 47(9), 2361-2376.
  41. Chua, S., and Liang Xu (2017). Representer-Based Variational Data Assimilation Systems: A Review. Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications Vol III, 71-81.
  42. Coelho E., P. Hogan, G. Jacobs, P. Thoppil, H. Huntley, B. Haus, B. Lipphardt, Jr., A. D. Kirwan, Jr., E. H. Ryan, J. Olascoaga, G. Novelli, F. Beron-Vera, A. C. Haza, A. C. Poje, A. Griffa, T.M. Özgökmen, D. Bogucki, S. S. Chen, M. Curcic, M. Iskandarani, F. Judt, N. Laxague, A. J. Mariano, A.J.H.M. Reniers, C. Smith, A. Valle-Levinson, and M. Wei (2015). Ocean Current Estimation Using a Multi-Model Ensemble Kalman Filter During the Grand Lagrangian Deployment Experiment (GLAD). Ocean Modelling, 87, 86-106.
  43. Curcic, M., S.S. Chen and T. M. Özgökmen (2016). Hurricane‐Induced Ocean Waves and Stokes Drift and their Impacts on Surface Transport and Dispersion in the Gulf of Mexico. Geophysical Research Letters, 43(6), 2773-2781.
  44. Cyriac, R., J.C. Dietrich, J.G. Fleming, B.O. Blanton, C. Kaiser, C.N. Dawson, R.A. Luettich (2018). Variability in Coastal Flooding predictions due to forecast errors during Hurricane Arthur. Coastal Engineering, 137, 59-78.
  45. Cyriac, R., J.C. Dietrich, C.A. Blain, C.N. Dawson, K.M. Dresback, A. Fathid, M.V. Bilskie, H.C. Graber, S.C. Hagen, R.L. Kolar (2020). Wind and tide effects on the Choctawhatchee Bay plume and implications for surface transport at Destin Inlet. Regional Studies in Marine Science, 35, 101131.

    46. D

  46. D’Asaro, E., A. Shcherbina, J.M. Klymak, J. Molemaker, G. Novelli, C.M. Guigand, A. Haza, B. Haus, E. Ryan, G.A. Jacobs, H.S. Huntley, N.J.M. Laxague, S. Chen, F. Judt, J.C. McWilliams, R. Barkan, A.D. Kirwan, Jr., A.C. Poje, T.M. Özgökmen (2018). Ocean convergence and dispersion of flotsam. Proceedings of the National Academy of Sciences, 115(6), 1162-1167.
  47. D’Asaro, E. A., D. F. Carlson, M. Chamecki, R. R. Harcourt, B. K. Haus, B. Fox-Kemper, M. J. Molemaker, A. C. Poje, and Di Yang (2020). Advances in Observing and Understanding Small-Scale Open Ocean Circulation During the Gulf of Mexico Research Initiative Era. Frontiers in Mararine Science, 7, 349.
  48. Dean, C., A. Soloviev, A. Hirons, T. Frank, J. Wood (2016). Biomixing Due to Diel Vertical Migrations of Zooplankton: Comparison of Computational Fluid Dynamics Model with Observations. Ocean Modelling, 98, 51-64.
  49. Deremble, B. (2016). Convective plumes in rotating systems. J. Fluid. Mechanics, 799(7), 27-55.
  50. Dewar, W.K., J. Schoonover, T.J. McDougall, and W.R. Young (2015). Semicompressible Ocean Dynamics. J. Phys. Oceanogr., 45, 149–156.
  51. Dewar, W. K., J. Schoonover, T. McDougall, R. Klein (2016). Semicompressible Ocean Thermodynamics and Boussinesq Energy Conservation. Fluids, 1(2), 9.
  52. Dietrich, J.C., C.J. Trahan, M.T. Howard, J.G. Fleming, R.J. Weaver, S. Tanaka, L. Yu, R.A. Luettich, Jr., C.N. Dawson, G. Wells, J.J. Westerink, A. Lu, K. Vega, A. Kubach, K.M. Dresback, R.L. Kolar, C. Kaiser, and R.R. Twilley (2012). Surface trajectories of oil transport along the northern coastline of the Gulf of Mexico. Cont. Shelf Res., 41(1), 17-47.
  53. Dietrich, J.C., C.N. Dawson, J.M. Proft, M.T. Howard, G. Wells, J.G. Fleming, R.A. Luettich Jr, J.J. Westerink, Z. Cobell, M. Vitse, H. Lander, B.O. Blanton, C.M. Szpilka, J.H. Atkinson (2013). Real-Time Forecasting and Visualization of Hurricane Waves and Storm Surge Using SWAN+ADCIRC and FigureGen. Computational Challenges in the Geosciences, The IMA Volumes in Mathematics and its Applications, 156, 49-70.
  54. Dietrich, J.C., A. Muhammad, M. Curcic, A. Fathi, C. Dawson, S. Chen, R. Luettich (2018). Sensitivity of Storm Surge Predictions to Atmospheric Forcing during Hurricane Isaac (2012). Journal of Waterway, Port, Coastal, and Ocean Engineering, 44(1), 04017035.
  55. Donelan, M. A., M. Curcic, S. S. Chen, and A. K. Magnusson (2012). Modeling waves and wind stress. JGR-Oceans, 117(C11), C00J23.
  56. Drouin, K.L., A.J. Mariano, E.H. Ryan, L.C. Laurindo (2019). Lagrangian simulation of oil trajectories in the Florida Straits. Marine Pollution Bulletin, 140(3), 204-218.
  57. Duran, R., F.J. Beron-Vera, M.J. Olascoaga (2018). Extracting quasi-steady Lagrangian transport patterns from the ocean circulation: An application to the Gulf of Mexico. Nature.com/Scientific Reports, 8(1), 5218.

    58. F

  58. Fabregat, A., W.K. Dewar, T.M. Özgökmen, A.C. Poje, and N. Wienders (2015). Numerical Simulations of Turbulent Thermal, Bubble and Hybrid Plumes. Ocean Modelling, 90, 16-28.
  59. Fabregat A.T., A.C. Poje, T.M. Özgökmen and W.K. Dewar (2016). Effects of rotation on turbulent buoyant plumes in stratified environments. JGR-Oceans, 121(8), 5397-5417, Gulf Oil Spill special section.
  60. Fabregat, A., B. Deremble, A.C. Poje, T.M. Özgökmen and W.K. Dewar (2016). Dynamics of multiphase turbulent plumes with hybrid buoyancy sources in stratified environments. Physics of Fluids, 28(9), 095109.
  61. Fabregat, A., A.C. Poje, T.M. Özgökmen and W.K. Dewar (2017). Numerical simulations of rotating bubble plumes in stratified environments. JGR-Oceans, 122(8), 6795-6813.
  62. Fabregat, A., B. Deremble, N. Wienders, A. Stroman, A.C. Poje, T.M. Özgökmen and W.K. Dewar (2017). Rotating 2d point source plume models with application to Deep Water Horizon. Ocean Modelling, 119, 118-135.
  63. Fiorentino, L., M.J. Olascoaga, and A.D.K.J. Reniers (2014). Analysis of water quality and circulation of four recreational Miami beaches through the use of Lagrangian Coherent Structures. Marine Pollution Bulletin, 83(1), 181-189.
  64. Frank D., J. R. Landel, S. B. Dalziel, and P. F. Linden (2017). Anticyclonic precession of a plume in a rotating environment. Geophys. Res. Lett., 44(18), 9400-9407.
  65. Fredj, E., D. Carlson, Y. Amitai, A. Gozolchiani, H. Gildor (2016). The Particle Tracking and Analysis Toolbox (PaTATO) for Matlab. Limnology and Oceanography, 14(9), 586-599.
  66. Fujimura, A., A. Soloviev, S. Hyung Rhee, and R. Romeiser​ (2016). Coupled Model Simulation of Wind Stress Effect on Far Wakes of Ships in SAR Images. Transactions on Geoscience and Remote Sensing, 54(5), 2543-2551.

    67. G

  67. Geng, X., M. C. Boufadel, K. Lee, S. Abrams, and M. Suidan (2015). Biodegradation of subsurface oil in a tidally influenced sand beach: Impact of hydraulics and interaction with pore water chemistry. Water Resour. Res., 51(5), 3193–3218.
  68. Geng, X., and M. C. Boufadel (2015). Impacts of evaporation on subsurface flow and salt accumulation in a tidally influenced beach. Water Resour. Res., 51(7), 5547–5565.
  69. Geng, X., M. Boufadel, T. Özgökmen, T. King, K. Lee, Y. Lu, Z. Lin (2016). Oil droplets transport due to irregular waves: Development of large-scale spreading coefficients. Marine Pollution Bulletin, 104(1–2), 279–289.
  70. Geng, X., Z. Pan, M. C. Boufadel, T. Özgökmen, K. Lee, and L. Zhao (2016). Simulation of oil bioremediation of a tidally-influenced beach: Spatio-temporal evolution of nutrient and dissolved oxygen. JGR-Oceans, 121(4), 2385-2404, Gulf Oil Spill special section.
  71. Geng, Xiaolong, Michel C. Boufadel, and Nancy Jackson (2016). Evidence of salt accumulation in beach intertidal zone due to evaporation. Nature.com/Scientific Reports, 6, 31486.
  72. Geng, Xiaolong, and Michel C. Boufadel (2017). Spectral responses of gravel beaches to tidal signals. Nature.com/Scientific Reports, (7), 40770.
  73. Golshan, R., A.E. Tejada-Martínez, M. Juha, and Y. Bazilevs (2017). LES and RANS simulation of wind- and wave-forced oceanic turbulent boundary layers in shallow water with wall modeling. Computers and Fluids, 142, 96-10.
  74. Golshan, R., M. C. Boufadel, V. A. Rodriguez, X. Geng, F. Gao, T. King, B. Robinson, and A. E. Tejada-Martínez (2018). Oil droplet transport under non-breaking waves: An Eulerian RANS approach combined with a Lagrangian particle dispersion model. Journal of Marine Science and Engineering, 6(1), 7.
  75. Goncalves, Rafael C., Mohamed Iskandarani, Ashwanth Srinivasan, Carlisle Thacker, Eric Chassignet, and Omar M. Knio (2016). A framework to quantify uncertainty in simulations of oil transport in the ocean. JGR-Oceans, 121(4), 2058-2077.
  76. Goncalves, C.R., M. Iskandarani, W. Thacker and T. M. Özgökmen (2019). Reconstruction of submesoscale velocity field from surface drifters. Journal of Physical Oceanography, 49(4), 941–958.
  77. Goni, G. J., J. A. Trinanes, A. MacFadyen, D. Streett, M. J. Olascoaga, M. L. Imhoff, F. Muller-Karger, and M. A. Roffer (2015). Variability of the Deepwater Horizon Surface Oil Spill Extent and its Relationship to Varying Ocean Currents and Extreme Weather Conditions. Mathematical Modelling and Numerical Simulation of Oil Pollution Problems, Springer, 2, 1-22.
  78. Gough, M. K., A. J. H. M. Reniers, J. H. MacMahan, and S. D. Howden (2016). Resonant near-surface inertial oscillations in the northeastern Gulf of Mexico. JGR-Oceans, 121(4), 2163-2182, Gulf Oil Spill special section.
  79. Gough, M. K., F. J. Beron-Vera, M. J. Olascoaga, J. Sheinbaum, J. Juoanno and R. Duran (2019). Persistent Lagrangian transport patterns in the northwestern Gulf of Mexico. J. Phys. Oceanogr., 49(2), 353-367.
  80. Graham, Lindley, Troy Butler, Scott Walsh, Clint Dawson, Joannes J. Westerink (2017). A Measure-Theoretic Algorithm for Estimating Bottom Friction in a Coastal Inlet: Case Study of Bay St. Louis during Hurricane Gustav (2008). Monthly Weather Review, 145(3), 929-954.
  81. Grossi, Matthew D., Miroslav Kubat, Tamay M.Özgökmen (2020). Predicting particle trajectories in oceanic flows using artificial neural networks. Ocean Modelling, 156, 101707.

    82. H

  82. Hajieghrary, Hadi, M. Ani Hsieh, Ira B. Schwartz (2016). Multi-agent search for source localization in a turbulent medium. Physics Letters A, 380(20), 1698-1705.
  83. Haller, G., and F.J. Beron-Vera (2012). Geodesic theory of transport barriers in two-dimensional flows. Physica D, 241(20), 1680-1702.
  84. Haller, G., and F.J. Beron-Vera (2013). Coherent Lagrangian vortices: The black holes of turbulence. J. Fluid Mech., 731, R4.
  85. Haller, G., and F.J. Beron-Vera (2014). Addendum to ‘Coherent Lagrangian vortices: the black holes of turbulence.’ J. Fluid Mech., 755, R3.
  86. Halliwell, Jr., G. R., A. Srinivasan, V. Kourafalou, H. Yang, D. Willey, M. Le Henaff, and R. Atlas (2014). Rigorous evaluation of a fraternal twin ocean OSSE system for the open Gulf of Mexico. J. Atmos. Ocean. Technol., 31(1), 105–130.
  87. Hamilton, B., Dean, C., Kurata, N., Vella, K., Soloviev, A., Tartar, A., Shivji, M., Matt, S., Perrie, W., Lehner, S., B. Zhang (2015). Surfactant associated bacteria in the sea surface microlayer: Case studies in the Straits of Florida and the Gulf of Mexico. Canadian Journal of Remote Sensing, 41(2), 135-143.
  88. Haza, A.C., T.M. Özgökmen, A. Griffa, A.C. Poje, and M.-P. Lelong (2014). How Does Drifter Position Uncertainty Affect Ocean Dispersion Estimates? J. Atmos. Ocean. Technol., 31(12), 2809–2828.
  89. Haza, Angelique, Tamay M Özgökmen, Patrick J Hogan (2016). Impact of submesoscales on surface material distribution in a Gulf of Mexico mesoscale eddy. Ocean Modelling, 107, 28-47.
  90. Haza, A., E. D’Asaro, H. Chang, S. Chen, M. Curcic, C. Guigand, H.S. Huntley, G. Jacobs, G. Novelli, T.M. Özgökmen, A.C. Poje, E. Ryan, A. Shcherbina (2018). Drogue-loss detection of surface drifters during the Lagrangian Submesoscale Experiment (LASER). J. Atmos. Oceanic Technol., 35(4), 705-725.
  91. Haza, A.C., N. Paldor, T.M. Ozgokmen, G. Jacobs, S. Chen and M. Curcic (2019). Wind-Based Estimations of Ocean Surface Currents from Massive Clusters of Drifters in the Gulf of Mexico. JGR-Oceans, 124(8), 5844-5869.
  92. Howe, K.L., C.W. Dean, J.A. Kluge, A.V. Soloviev, A. Tartar, M. Shivji, S. Lehner, W. Perrie (2018). Relative abundance of Bacillus spp., surfactant-associated bacterium present in a natural sea slick observed by satellite SAR imagery over the Gulf of Mexico. Elementa: Science of the Anthropocene, 6(1):8.
  93. Huguenard, K. D., D. J. Bogucki, D. G. Ortiz-Suslow, N. J. M. Laxague, J. H. MacMahan, T. M. Özgökmen, B. K. Haus, A. J. H. M. Reniers, J. Hargrove, A. V. Soloviev, H. Graber (2016). On the nature of the frontal zone of the Choctawhatchee Bay plume in the Gulf of Mexico. JGR-Oceans, 121(2), 1322-1345, Gulf Oil Spill special section.
  94. Huguenard, K.D., D.J. Bogucki, D.G. Ortiz-Suslow, J.H.MacMahan (2020). Nearshore response to cold air outbreaks in the Gulf of Mexico. Estuarine, Coastal and Shelf Science, 235, 106604.
  95. Huntley, H.S., B.L. Lipphardt, Jr., G. Jacobs, A.D. Kirwan, Jr. (2015). Clusters, deformation, and dilation: Diagnostics for material accumulation regions. JGR-Oceans, 120(10), 6622-6636, Gulf Oil Spill special section.
  96. Huntley, Helga S., B. L. Lipphardt Jr., A. D. Kirwan Jr. (2019). Anisotropy and Inhomogeneity in Drifter Dispersion. JGR-Oceans, 124(12), 8667-8682.
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  194. Sulman, M. H. M., H.S. Huntley, B.L. Lipphardt, Jr., and A.D. Kirwan, Jr. (2012). Out of Flatland: Three-dimensional aspects of Lagrangian transport in geophysical fluids. AGU Geophysical Monograph Series: Langrangian Modeling of the Atmosphere, 77-84.
  195. Sulman, M. H. M., H.S. Huntley, B.L. Lipphardt, Jr., and A.D. Kirwan, Jr. (2013). Leaving Flatland: Diagnostics for Lagrangian coherent structures in three-dimensional flows. Physica D, 258, 77-92.
  196. Sulman, M. H. M., H.S. Huntley, B.L. Lipphardt, Jr., G. Jacobs, P. Hogan, and A.D. Kirwan, Jr. (2013). Hyperbolicity in temperature and flow fields during the formation of a Loop Current ring. Nonlinear Proc. Geophys., 20(5), 883-892.
  197. Sun, D., A. Bracco, R. Barkan, M. Berta, D. Dauhajre, M. J. Molemaker, J. Choi, G. Liu, A. Griffa, J. C. McWilliams (2020). Diurnal Cycling of Submesoscale Dynamics: Lagrangian Implications in Drifter Observations and Model Simulations of the Northern Gulf of Mexico. Journal of Physical Oceanography, 50(6), 1605-1623.
  198. Suzuki, Nobuhiro, and Baylor Fox-Kemper (2016). Understanding Stokes forces in the wave-averaged equations. JGR-Oceans, 121(5), 3579-3596, Gulf Oil Spill special section.
  199. Suzuki, Nobuhiro, Baylor Fox-Kemper, Peter E. Hamlington, and Luke P. Van Roekel (2016). Surface waves affect frontogenesis. JGR-Oceans, 121(5), 3597–3624, Gulf Oil Spill special section.

    200. T

  200. Taylor, J. R. (2018). Accumulation and Subduction of Buoyant Material at Submesoscale Fronts. Journal of Physical Oceanography, 48, 1233-1241.
  201. Thacker, W.C., M. Iskandarani, R. Goncalves, A. Srinivasan, and O.M. Knio (2015). Pragmatic aspects of uncertainty propagation: A conceptual review. Ocean Modelling, 95, 25-36.

    202. V

  202. Valle-Levinson, A., K. Huguenard, L. Ross, J. Branyon, J. MacMahan, A. Reniers (2015). Tidal and nontidal exchange at a subtropical inlet: Destin Inlet, Northwest Florida. Estuarine, Coastal and Shelf Science, 55, 137-147.
  203. van Sebille, Eric, et. al. (2020). The physical oceanography of the transport of floating marine debris. Environmental Research Letters, 15(2), 023003.
  204. Vanderplow, B., A. V. Soloviev, C. W. Dean, B. K. Haus, R. Lukas, M. Sami, I. Ginis (2020). Potential effect of bio-surfactants on sea spray generation in tropical cyclone conditions. Nature.com/Scientific Reports, 10, 19057.

    205. W

  205. Walker, R., A.E. Tejada-Martínez, C.E. Grosch (2016). Large-eddy simulation of a coastal ocean under the combined effects of surface heat fluxes and full-depth Langmuir circulation. Journal of Physical Oceanography, 46(8), 2411-2436.
  206. Walker, B. D., E. R. M. Druffel, J. Kolasinski, B. J. Roberts, X. Xu, and B. E. Rosenheim (2017). Stable and radiocarbon isotopic composition of dissolved organic matter in the Gulf of Mexico. Geophysical Research Letters, 44(16), 8424-8434.
  207. Wang, P., and Tamay M. Özgökmen (2015). How Do Hydrodynamic Instabilities Affect 3D Transport in Geophysical Vortices? Ocean Modelling, 87, 48-66.
  208. Wang, P., and T. M. Özgökmen (2016). Spiral inertial waves emitted from geophysical vortices. Ocean Modelling, 99, 22-42.
  209. Wang, Peng, Tamay M. Özgökmen, Angelique C. Haza (2018). Material dispersion by oceanic internal waves. Environmental Fluid Mechanics, 18(1), 149-171.
  210. Wang, P and T.M. Özgökmen (2018). Langmuir circulation with explicit surface waves from moving-mesh modelling. Geophysical Research Letters, 45(1), 216-226.
  211. Wang, S., M. Iskandarani, A. Srinivasan, W. C. Thacker, J. Winokur, O. M. Knio (2016). Propagation of uncertainty and sensitivity analysis in an integral oil-gas plume model. JGR-Oceans, 121(5), 3488-3501, Gulf Oil Spill special section.
  212. Wang, S., G. Li, M. Iskandarani, M. Le Hénaff, O. M. Knio (2018). Verifying and assessing the performance of the perturbation strategy in polynomial chaos ensemble forecasts of the circulation in the Gulf of Mexico. Ocean Modelling, 131, 59-70.
  213. Wang, Tao, Roy Barkan, James C. McWilliams, and M. Jeroen Molemaker (2021). Structure of Submesoscale Fronts of the Mississippi River Plume. Journal of Physical Oceanography, 51(4), 1113–1131.
  214. Wei, M., G. Jacobs, C. Rowley, C. Barron, P. Hogan, P. Spence, O.M. Smedstad, P. Muscarella, and E. Coelho (2013). The impact of initial spread calibration on the RELO ensemble and its application to Lagrangian dynamics. Nonlinear Proc. Geophys., 20(5), 621–641.
  215. Wei, M., C. Rowley, P. Martin, C.N. Barron, and G. Jacobs (2014). The U.S. Navy’s RELO Ensemble Prediction System and its performance in the Gulf of Mexico. Quart. J. R. Meteorol. Soc., 140(681), 1129-1149.
  216. Wei. M., G. Jacobs, C. Rowley, C. N. Barron, P. Hogan, P. Spence, O.M. Smedstad, P. Martin, P. Muscarella and E. Coelhod (2016). The performance of the US Navy’s RELO ensemble, NCOM, HYCOM during the period of GLAD at-sea experiment in the Gulf of Mexico. Deep-Sea Research II, 129, 374-393.
  217. Winokur, J., P. Conrad, I. Sraj, O.M. Knio, A. Srinivasan, W.C. Thacker, Y. Marzouk, and M. Iskandarani (2013). A priori testing of sparse adaptive polynomial chaos expansions using an ocean general circulation model database. Comput. Geosci., 17(6), 899-911.

    218. X

  218. Xia, Junfei, Wei Zhang, Alesia C. Ferguson, Kristina D. Mena, Tamay M. Özgökmen, Helena M. Solo-Gabriele (2020). Use of chemical concentration changes in coastal sediments to compute oil exposure dates. Environmental Pollution, 259, 113858.
  219. Xia, Junfei, Wei Zhang, Alesia C. Ferguson, Kristina D. Mena, Tamay M. Özgökmen, Helena M. Solo-Gabriele (2021). A novel method to evaluate chemical concentrations in muddy and sandy coastal regions before and after oil exposures. Environmental Pollution, 269, 116102.

    220. Y

  220. Yaremchuk, M., P. Spence, M. Wei, and G. Jacobs (2016). Lagrangian predictability in the DWH region from HF radar observations and model output. Deep-Sea Research II, 129, 394-400.
  221. Yaremchuk, M. and E. Coelho (2015). Filtering drifter trajectories sampled at submesoscale resolution. IEEE Journal of Oceanic Engineering, 40(3), 497-505.
  222. Yaremchuk, M. and P. Martin (2014). On sensitivity analysis within the 4DVAR framework. Monthly Weather Review, 142(2), 774-787.

    223. Z

  223. Zhao, L., M.C. Boufadel, K. Lee, T. King, N. Loney, X. Geng (2016). Evolution of Bubble Size Distribution from Gas Blowout in Shallow Water. JGR-Oceans, 121(3), 1573–1599, Gulf Oil Spill special section.
  224. Zhu, P., and J. Furst (2013). On the parameterization of surface momentum transport via drag coefficient in low wind conditions. Geophysical Research Letters, 40(11), 2824-2828.
  225. Zhu, P. (2015). On the mass-flux representation of vertical transport in moist convection. J. Atmos. Sci., 72(12), 4445-4468.
  226. Zhu, P., Y. Wang, S. Chen, M. Curcic, C. Gao (2016). Impact of storm-induced cooling of sea surface temperature on large turbulent eddies and vertical turbulent transport in the atmospheric boundary layer of Hurricane Isaac. JGR-Oceans, 121(1), 861-876, Gulf Oil Spill special section.

Submitted

Patents

  1. Jacobs, G. A., A. D. Kirwan, H. S. Huntley, B. L. Lipphardt. Gathering Materials on the Ocean Surface based on Forecasting Area Density. Case Number 103489-US2.
  2. Jacobs, G., S. Smith, R. Helber. System and Method for Correcting a Model-Derived Vertical Structure of Ocean Temperature and Ocean Salinity based on Vertical Velocity. Case Number 102393-UAS2.
  3. Jacobs; G. A., S. R. Smith, R. Scott, R. W. Helber. System and method for correcting a model-derived vertical structure of ocean temperature and ocean salinity based on velocity observations. United States Patent 9,811,614
  4. Özgökmen, T.M., C. Cousin, C. Guigand, G. Novelli. Biodegradable Oceanic Drifter Tracking Device. U.S. Patent No. US-2018-0031733-A1.