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“This research was made possible by a grant from The Gulf of Mexico Research Initiative. Data are publicly available through the Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC) at https://data.gulfresearchinitiative.org (doi: [, , , …].”
“This research was made possible in part by a grant from The Gulf of Mexico Research Initiative, and in part by [list other sources]. Data are publicly available through the Gulf of Mexico Research Initiative Information & Data Cooperative (GRIIDC) at https://data.gulfresearchinitiative.org (doi: [, , , …].”

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  1. Aizinger, V., J. Proft, C. Dawson, D. Pothina, and S. Negusse (2013). A three-dimensional discontinuous Galerkin model applied to the baroclinic simulation of Corpus Christi Bay. Ocean Dyn., 63, 89-113.
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  3. Bachman, S.D., B. Fox-Kemper, J.R. Taylor, L.N. Thomas (2017). Parameterization of Frontal Symmetric Instabilities. I: Theory for Resolved Fronts. Ocean Modelling, 109, 72-95.
  4. Benbow, A. C., J. H. MacMahan, E. B. Thornton (2017). Analysis of Surface Foam Holes Associated with Depth-Limited Breaking. Journal of Coastal Research, accepted.
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  9. Berta, M., A. Griffa, M. Magaldi, T. Özgökmen, A. Poje, A. Haza, J. Olascoaga (2015). Improved surface velocity and trajectory estimates in the Gulf of Mexico from blended satellite altimetry and drifter data. J. Atmos. Ocean. Technol., 32(10), 1880-1901.
  10. Berta, M., A. Griffa, T. M. Özgökmen and A.C. Poje (2016). Submesoscale evolution of surface drifter triads in the Gulf of Mexico. Geophysical Research Letters, 43(22), 12228-12233.
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  13. Bogucki, D.J., K. Huguenard, B.K. Haus, T.M. Özgökmen, A. Reniers, N. J. M. Laxague (2015). Scaling Laws for the Upper-Ocean Temperature Dissipation Rate. Geophysical Research Letters, 42(3), 839-846.
  14. Bogucki, D. J., and J. A. Domaradzki (2015). Temperature gradient spectra and temperature dissipation rate in a turbulent convective flow. Journal of Turbulence, 16(12), 1179-1198.
  15. Brouwer, R. L., M. A. de Schipper, P. F. Rynne, F. J. Graham, A. J.H.M. Reniers, J. H. MacMahan (2015). Surf zone monitoring using rotary wing Unmanned Aerial Vehicles. J. Atmos. Ocean. Technol., 32(4), 855–863.
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  17. Carrier, M., H. Ngodock, S. Smith, P. Muscarella, G. Jacobs, T. Özgökmen, B. Haus, and B. Lipphardt (2014). Impact of Assimilating Ocean Velocity Observations Inferred from Lagrangian Drifter Data Using the NCOM-4DVAR. Mon. Wea. Rev., 142(4), 1509–1524.
  18. Carrier, M., H. Ngodock, P. Muscarella, S. Smith (2016). Impact of Assimilating Surface Velocity Observations on the Model Sea Surface Height using the NCOM-4DVAR. Monthly Weather Review, 144, 1051-1068.
  19. Chanton, J., T. Zhao, B. E. Rosenheim, S. Joye, S. Bosman, C. Brunner, K. M. Yeager, A. R. Diercks, D. Hollander (2015). Using Natural Abundance Radiocarbon To Trace the Flux of Petrocarbon to the Seafloor Following the Deepwater Horizon Oil Spill. Environmental Science and Technology, 49(2), 847–854.
  20. Chen, S. S., and M. Curcic (2016). Ocean surface waves in Hurricane Ike (2008) and Superstorm Sandy (2012): Coupled modeling and observations. Ocean Modelling, 103, 161-176.
  21. Coelho E., P. Hogan, G. Jacobs, P. Thoppil, H. Huntley, B. Haus, B. Lipphardt, Jr., A. D. Kirwan, Jr., E. H. Ryan, J. Olascoaga, G. Novelli, F. Beron-Vera, A. C. Haza, A. C. Poje, A. Griffa, T.M. Özgökmen, D. Bogucki, S. S. Chen, M. Curcic, M. Iskandarani, F. Judt, N. Laxague, A. J. Mariano, A.J.H.M. Reniers, C. Smith, A. Valle-Levinson, and M. Wei (2015). Ocean Current Estimation Using a Multi-Model Ensemble Kalman Filter During the Grand Lagrangian Deployment Experiment (GLAD). Ocean Modelling, 87, 86-106.
  22. Curcic, M., S.S. Chen and T. M. Özgökmen (2016). Hurricane‐Induced Ocean Waves and Stokes Drift and their Impacts on Surface Transport and Dispersion in the Gulf of Mexico. Geophysical Research Letters, 43(6), 2773-2781.
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  24. Dean, C., A. Soloviev, A. Hirons, T. Frank, J. Wood (2016). Biomixing Due to Diel Vertical Migrations of Zooplankton: Comparison of Computational Fluid Dynamics Model with Observations. Ocean Modelling, 98, 51-64.
  25. Deremble, B. (2016). Convective plumes in rotating systems. J. Fluid. Mechanics, 799(7), 27-55.
  26. Dewar, W.K., J. Schoonover, T.J. McDougall, and W.R. Young (2015). Semicompressible Ocean Dynamics. J. Phy. Oceanogr., 45, 149–156.
  27. Dewar, William K., Joseph Schoonover, Trevor McDougall, Rupert Klein (2016). Semicompressible Ocean Thermodynamics and Boussinesq Energy Conservation. Fluids, 1(2), 9.
  28. Dietrich, J.C., C.J. Trahan, M.T. Howard, J.G. Fleming, R.J. Weaver, S. Tanaka, L. Yu, R.A. Luettich, Jr., C.N. Dawson, G. Wells, J.J. Westerink, A. Lu, K. Vega, A. Kubach, K.M. Dresback, R.L. Kolar, C. Kaiser, and R.R. Twilley (2012). Surface trajectories of oil transport along the northern coastline of the Gulf of Mexico. Cont. Shelf Res., 41(1), 17-47.
  29. Dietrich, J.C., C.N. Dawson, J.M. Proft, M.T. Howard, G. Wells, J.G. Fleming, R.A. Luettich Jr, J.J. Westerink, Z. Cobell, M. Vitse, H. Lander, B.O. Blanton, C.M. Szpilka, J.H. Atkinson (2013). Real-Time Forecasting and Visualization of Hurricane Waves and Storm Surge Using SWAN+ADCIRC and FigureGen. Computational Challenges in the Geosciences, The IMA Volumes in Mathematics and its Applications, 156, 49-70.
  30. Dietrich, J.C., A. Muhammad, M. Curcic, A. Fathi, C. Dawson, S. Chen, R. Luettich (2017). Sensitivity of Storm Surge Predictions to Atmospheric Forcing during Hurricane Isaac (2012). Journal of Waterway, Port, Coastal, and Ocean Engineering, accepted.
  31. Donelan, M. A., M. Curcic, S. S. Chen, and A. K. Magnusson (2012). Modeling waves and wind stress. J. Geophys. Res., 117, C00J23, doi:10.1029/2011JC007787.
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  33. Fabregat, A., W.K. Dewar, T.M. Özgökmen, A.C. Poje, and N. Wienders (2015). Numerical Simulations of Turbulent Thermal, Bubble and Hybrid Plumes. Ocean Modelling, 90, 16-28.
  34. Fabregat A.T., A.C. Poje, T.M. Özgökmen and W.K. Dewar (2016). Effects of rotation on turbulent buoyant plumes in stratified environments. JGR-Oceans, 121(8), 5397-5417, Gulf Oil Spill special section.
  35. Fabregat, A., B. Deremble, A.C. Poje, T.M. Özgökmen and W.K. Dewar (2016). Dynamics of multiphase turbulent plumes with hybrid buoyancy sources in stratified environments. Physics of Fluids, 28(9) 095109.
  36. Fiorentino, L., M.J. Olascoaga, and A.D.K.J. Reniers (2014). Analysis of water quality and circulation of four recreational Miami beaches through the use of Lagrangian Coherent Structures. Marine Pollution Bulletin, 83(1), 181-189.
  37. Fredj, Erick, Daniel Carlson, Yael Amitai, Avi Gozolchiani, Hezi Gildor (2016). The Particle Tracking and Analysis Toolbox (PaTATO) for Matlab. Limnology and Oceanography, 14(9), 586-599.
  38. Fujimura, A., A. Soloviev, S. Hyung Rhee, and R Romeiser​ (2016). Coupled Model Simulation of Wind Stress Effect on Far Wakes of Ships in SAR Images. Transactions on Geoscience and Remote Sensing, 54(5), 2543-2551.
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  40. Geng, X., M. C. Boufadel, K. Lee, S. Abrams, and M. Suidan (2015). Biodegradation of subsurface oil in a tidally influenced sand beach: Impact of hydraulics and interaction with pore water chemistry. Water Resour. Res., 51(5), 3193–3218, doi:10.1002/2014WR016870.
  41. Geng, X., and M. C. Boufadel (2015). Impacts of evaporation on subsurface flow and salt accumulation in a tidally influenced beach. Water Resour. Res., 51(7), 5547–5565, doi:10.1002/2015WR016886.
  42. Geng, X., M. Boufadel, T. Özgökmen, T. King, K. Lee, Y. Lu, Z. Lin (2016). Oil droplets transport due to irregular waves: Development of large-scale spreading coefficients. Marine Pollution Bulletin, 104(1–2), 279–289.
  43. Geng, X., Z. Pan, M. C. Boufadel, T. Özgökmen, K. Lee, and L. Zhao (2016). Simulation of oil bioremediation of a tidally-influenced beach: Spatio-temporal evolution of nutrient and dissolved oxygen. JGR-Oceans, 121(4), 2385-2404, Gulf Oil Spill special section.
  44. Geng, Xiaolong, Michel C. Boufadel, and Nancy Jackson (2016). Evidence of salt accumulation in beach intertidal zone due to evaporation. Nature.com/Scientific Reports, 6, 31486.
  45. Golshan, R., A.E. Tejada-Martínez, M. Juha, and Y. Bazilevs (2017). LES and RANS simulation of wind- and wave-forced oceanic turbulent boundary layers in shallow water with wall modeling. Computers and Fluids, 142, 96-10.
  46. Goncalves, Rafael C., Mohamed Iskandarani, Ashwanth Srinivasan, Carlisle Thacker, Eric Chassignet, and Omar M. Knio (2016). A framework to quantify uncertainty in simulations of oil transport in the ocean. Journal of Geophysical Research, 121(4), 2058-2077.
  47. Goni, G. J., J. A. Trinanes, A. MacFadyen, D. Streett, M. J. Olascoaga, M. L. Imhoff, F. Muller-Karger, and M. A. Roffer (2015). Variability of the Deepwater Horizon Surface Oil Spill Extent and its Relationship to Varying Ocean Currents and Extreme Weather Conditions. Mathematical Modelling and Numerical Simulation of Oil Pollution Problems, Springer, 2, 1-22.
  48. Gough, M. K., A. J. H. M. Reniers, J. H. MacMahan, and S. D. Howden (2016). Resonant near-surface inertial oscillations in the northeastern Gulf of Mexico. JGR-Oceans, 121(4), 2163-2182, Gulf Oil Spill special section.
  49. Graham, Lindley, Troy Butler, Scott Walsh, Clint Dawson, Joannes J. Westerink (2017). A Measure-Theoretic Algorithm for Estimating Bottom Friction in a Coastal Inlet: Case Study of Bay St. Louis during Hurricane Gustav (2008). Monthly Weather Review, 145(3), 929-954.
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  51. Hajieghrary, Hadi, M. Ani Hsieh, Ira B. Schwartz (2016). Multi-agent search for source localization in a turbulent medium. Physics Letters A, 380(20), 1698-1705.
  52. Haller, G., and F.J. Beron-Vera (2012). Geodesic theory of transport barriers in two-dimensional flows. Physica D, 241(20), 1680-1702.
  53. Haller, G., and F.J. Beron-Vera (2013). Coherent Lagrangian vortices: The black holes of turbulence. J. Fluid Mech., 731, R4.
  54. Haller, G., and F.J. Beron-Vera (2014). Addendum to ‘Coherent Lagrangian vortices: the black holes of turbulence.’ J. Fluid Mech., 755, R3.
  55. Halliwell, Jr., G. R., A. Srinivasan, V. Kourafalou, H. Yang, D. Willey, M. Le Henaff, and R. Atlas (2014). Rigorous evaluation of a fraternal twin ocean OSSE system for the open Gulf of Mexico. J. Atmos. Ocean. Technol., 31(1), 105–130.
  56. Hamilton, B., Dean, C., Kurata, N., Vella, K., Soloviev, A., Tartar, A., Shivji, M., Matt, S., Perrie, W., Lehner, S., B. Zhang (2015). Surfactant associated bacteria in the sea surface microlayer: Case studies in the Straits of Florida and the Gulf of Mexico. Canadian Journal of Remote Sensing, 41(2), 135-143.
  57. Haza, A.C., T.M. Özgökmen, A. Griffa, A.C. Poje, and M.-P. Lelong (2014). How Does Drifter Position Uncertainty Affect Ocean Dispersion Estimates? J. Atmos. Ocean. Technol., 31(12), 2809–2828.
  58. Haza, Angelique, Tamay M Özgökmen, Patrick J Hogan (2016). Impact of submesoscales on surface material distribution in a Gulf of Mexico mesoscale eddy. Ocean Modelling, 107(11), 28-47.
  59. Huguenard, K. D., D. J. Bogucki, D. G. Ortiz-Suslow, N. J. M. Laxague, J. H. MacMahan, T. M. Özgökmen, B. K. Haus, A. J. H. M. Reniers, J. Hargrove, A. V. Soloviev, H. Graber (2016). On the nature of the frontal zone of the Choctawhatchee Bay plume in the Gulf of Mexico. JGR-Oceans, 121(2), 1322-1345, Gulf Oil Spill special section.
  60. Huntley, H.S., B.L. Lipphardt, Jr., G. Jacobs, A.D. Kirwan, Jr. (2015). Clusters, deformation, and dilation: Diagnostics for material accumulation regions, JGR-Oceans, 120(10), 6622-6636, Gulf Oil Spill special section.


  61. Iskandarani, M., S. Wang, A. Srinivasan, W. Thacker, J. Winokur, O. Knio (2016). An overview of uncertainty quantification techniques with application to oceanic and oil-spill simulations. JGR-Oceans, 121(4), 2789-2808, Gulf Oil Spill special section.
  62. Iskandarani, M., M. Le Hénaff, W. C. Thacker, A. Srinivasan, and O. M. Knio (2016). Quantifying uncertainty in Gulf of Mexico forecasts stemming from uncertain initial conditions. JGR-Oceans, 121(7), 4819-4832, Gulf Oil Spill special section.
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  64. Jacobs, G., J. G. Richman, J. D. Doyle, P. Spence, B. Bartels, C. N. Barron, R. Helber, and F. Bub (2014). Simulating conditional deterministic predictability within ocean frontogenesis. Ocean Modelling, 78, 1–16.
  65. Jacobs, G.A., B. Bartels, D. Bogucki, F.J. Beron-Vera, S. S. Chen, E.F. Coelho, M. Curcic, A. Griffa, M. Gough, B.K. Haus, A.C. Haza, R.W. Helber, P.J. Hogan, H. Huntley, M. Iskandarani, F. Judt, A.D. Kirwan Jr., N. Laxague, A. Valle-Levinson, B. Lipphardt, A. Mariano, H.E. Ngodock, G. Novelli, M.J. Olascoaga, T.M. Özgökmen, P.G. Thoppil, A.C. Poje, A. J.H.M. Reniers, C.D. Rowley, E.H. Ryan, S.R. Smith, P.L. Spence, and M.Wei (2014). Data Assimilation Considerations for Improved Ocean Predictability during the Gulf of Mexico Grand Lagrangian Deployment (GLAD), Ocean Modelling, 83, 98-117.
  66. Jacobs, Gregg A., Helga S. Huntley, A. D. Kirwan, Jr., Bruce L. Lipphardt, Jr., Timothy Campbell, Travis Smith, Kacey Edwards, Brent Bartels (2016). Ocean processes underlying surface clustering. JGR-Oceans, 121(1), 180-197, Gulf Oil Spill special section.
  67. Joye, S.B., J. Montoya, S. Murawski, T. Özgökmen, T. Wade, R. Montuoro, B. Roberts, D. Hollander, W. Jeffrey, and J. Chanton (2014). A Rapid Response Study of the Hercules Gas Well Blowout. Eos Trans. AGU, 95(38), 341–342, (23 September 2014).
  68. Joye, Samantha B., Annalisa Bracco, Tamay M. Özgökmen, Jeffrey P. Chanton, Martin Grosell, Ian R. MacDonald, Erik E. Cordes, Joseph P. Montoya, Uta Passow (2016). The Gulf of Mexico Ecosystem, six years after the Macondo Oil Wll Blowout. Deep-Sea Research II, 129, 4-19.
  69. Judt, F., S. S. Chen (2015). A new aircraft hurricane wind climatology and applications in assessing predictive skill of tropical cyclone intensity using high-resolution ensemble forecasts. Geophysical Research Letters, 42, 14, 6043-6050.
  70. Judt, F., S. S. Chen, and J. Berner (2016). Predictability of Tropical Cyclone Intensity: Scale-dependent Forecast Error Growth in High-Resolution Stochastic Kinetic-Energy Backscatter Ensembles. Quart. J. R. Meteorol. Soc., 142, 43–57, Part A.
  71. Judt, Falko, Shuyi S. Chen, and Milan Curcic (2016). Atmospheric Forcing of the Upper Ocean Transport in the Gulf of Mexico: From Seasonal to Diurnal Scales. JGR-Oceans, 121(6), 4416-4433, Gulf Oil Spill special section.
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  73. Kirwan, Jr., A.D., H.S. Huntley, H. Chang (2017). Emergence of Coherent Clusters in the Ocean, in Nonlinear Advances in Geosciences. edited by A. Tsonis, Springer, accepted.
  74. Kurata, Naoko, Kate Vella, Bryan Hamilton, Mahmood Shivji, Alexander Soloviev, Silvia Matt, Aurélien Tartar, William Perrie (2016). Surfactant-associated bacteria in the near-surface layer of the ocean. Nature.com/Scientific Reports, 6, 19123.
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  76. Laxague, N. J. M., B. K. Haus, D. Bogucki, and T.M. Özgökmen (2015). Spectral characterization of fine-scale wind waves using shipboard optical polarimetry. JGR-Oceans, 120(4), 3140-3156.
  77. Laxague, Nathan J. M., Milan Curcic, Jan-Victor Björkqvist, and Brian K. Haus (2017). Gravity Capillary Wave Spectral Modulation by Gravity Waves. IEEE Transactions on Geoscience and Remote Sensing, 55(5), 2477-2485.
  78. Laxague, N.J.M., B.K. Haus, D.G. Ortiz-Suslow, C.J. Smith, G. Novelli, H. Dai, T.M. Özgökmen and H.C. Graber (2017). Passive optical sensing of the near-surface, wind-driven current profile. J. Atmos. Oceanic Technol., 34(5), 1097-1111.
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  80. Li, Guotu, Mohamed Iskandarani, Matthieu Le Hénaff, Justin Winokur, Olivier P. Le Maître, Omar M. Knio (2016). Quantifying initial and wind forcing uncertainties in the Gulf of Mexico. Computational Geosciences, 20(5), 1133–1153.
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  89. Mensa, J.A., T.M. Özgökmen, A.C. Poje, J. Imberger (2015). Material Transport in a Convective Surface Mixed Layer Under Weak Wind Forcing. Ocean Modelling, 96, 226-242.
  90. Mensa, Jean A., and Mary-Louise Timmermans (2017). Characterizing the seasonal cycle of upper-ocean flows under multi-year sea ice. Ocean Modeling, 113, 115-130.
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  117. Schroeder, K., J. Chiggiato, A.C. Haza, A. Griffa, T.M. Özgökmen, P. Zanasca, A. Molcard, M. Borghini, P.M. Poulain, R. Gerin, Z. Zambianchi, P. Falco, and C. Trees (2012). Targeted Lagrangian sampling of submesoscale dispersion at a coastal frontal zone. Geophysical Research Letters, 39(11), L11608.
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  144. Wang, Peng, Tamay M. Özgökmen, Angelique C. Haza (2016). Material dispersion by oceanic internal waves. Environmental Fluid Mechanics, accepted.
  145. Wei, M., G. Jacobs, C. Rowley, C. Barron, P. Hogan, P. Spence, O.M. Smedstad, P. Muscarella, and E. Coelho (2013). The impact of initial spread calibration on the RELO ensemble and its application to Lagrangian dynamics. Nonlinear Proc. Geophys., 20(5), 621–641.
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  150. Yaremchuk, M., P. Spence, M. Wei, and G. Jacobs (2016). Lagrangian predictability in the DWH region from HF radar observations and model output. Deep-Sea Research II, 129, 394-400.
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  1. Barkan, R., J.C. McWilliams, A.F. Shchepetkin, J. Molemaker, L. Renault, A. Bracco, J. Choi (2017). Submesoscale dynamics in the northern Gulf of Mexico. Part I: Regional and seasonal characterization, and the role of river outflow. J. Phys. Ocean., submitted.
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  14. Jacobs, Gregg, Baylor Fox-Kemper (2016). Open Ocean Dynamics. The Sea, submitted.
  15. Juha, M., J. Zhang, and A. E. Tejada-Martínez (2016). Large scale structures in LES of an oscillating open channel flow under the influence of surface cooling. Computers and Fluids, submitted.
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Patents Submitted


  1. Jacobs, G. A., A. D. Kirwan, H. S. Huntley, B. L. Lipphardt. Gathering Materials on the Ocean Surface based on Forecasting Area Density. Case Number 103489-US2.
  2. Jacobs, G., S. Smith, R. Helber. System and Method for Correcting a Model-Derived Vertical Structure of Ocean Temperature and Ocean Salinity based on Vertical Velocity. Case Number 102393-UAS2.
  3. Özgökmen, T.M., C. Cousin, C. Guigand, G. Novelli. Biodegradable Ocean Drifter. U.S. Provisional Patent Application No. 62/369,593.